PyDactim Documentation

Getting started

• PyDactim Tutorial
  • 🔧 Pipeline example
  • 💻 Viewer App
  • 📁 Managing DICOM files

Description

A MRI preprocessing tool which provides a dozen of functions easy to use made from some of the most popular Python libraries 🚀

It includes:

• Transformations: skull stripping, resampling, registration, histogram matching, bias field correction, normalization and so on

• Conversion: Dicom to Nifti, Nifti to Dicom

• Sorting: an elegant way to organize your Dicom files

• Anonymization: Dicom files can be anonymized according to your own rules

• Visualization: 2D and 3D light viewer

• Spectroscopy: generation of mask of the MRS voxel/slab

Installation

Requires at least Python 3.7 or above. Also requires Pytorch, Torchio, Numpy, Nibabel, SimpleITK, Pydicom, Dicom2nifti. Make sure to manually install PyTorch on your own !

Can be quickly installed with pip:

pip install pydactim

Indices and tables

• Index

• Module Index

• Search Page